STATISTICAL AND EVOLUTIONARY ANALYSIS OF BIOLOGICAL NETWORKS

STATISTICAL AND EVOLUTIONARY ANALYSIS OF BIOLOGICAL NETWORKS

CONTENTS


FRONT MATTER Michael P. H. Stumpf and Carsten Wiuf	i
A Network Analysis Primer MICHAEL P. H. STUMPF and CARSTEN WIUF	1
Evolutionary Analysis of Protein Interaction Networks CARSTEN WIUF and OLIVER RATMANN	17
Motifs in Biological Networks FALK SCHREIBER and HENNING SCHWÖBBERMEYER	45
Bayesian Analysis of Biological Networks: Clusters, Motifs, Cross-Species Correlations JOHANNES BERG and MICHAEL LÄSSIG	65
Network Concepts and Epidemiological Models ROWLAND R. KAO and ISTVAN Z. KISS	85
Evolutionary Origin and Consequences of Design Properties of Metabolic Networks THOMAS PFEIFFER and SEBASTIAN BONHOEFFER	113
Protein Interactions from an Evolutionary Perspective FLORENCIO PAZOS and ALFOSO VALENCIA	127
Statistical Null Models for Biological Network Analysis WILLIAM P. KELLY, THOMAS THORNE and MICHAEL P. H. STUMPF	145
BACK MATTER Michael P. H. Stumpf and Carsten Wiuf	167
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